Diversity of the small subunit ribosomal RNA gene of the arbuscular mycorrhizal fungi colonizing Clintonia borealis from a mixed-wood boreal forest.
Identifieur interne : 003E31 ( Main/Exploration ); précédent : 003E30; suivant : 003E32Diversity of the small subunit ribosomal RNA gene of the arbuscular mycorrhizal fungi colonizing Clintonia borealis from a mixed-wood boreal forest.
Auteurs : Tonia Debellis [Canada] ; Paul WiddenSource :
- FEMS microbiology ecology [ 0168-6496 ] ; 2006.
Descripteurs français
- KwdFr :
- ADN fongique (génétique), ADN fongique (isolement et purification), ARN ribosomique 18S (génétique), Analyse de regroupements (MeSH), Analyse de séquence d'ADN (MeSH), Biodiversité (MeSH), Canada (MeSH), Clonage moléculaire (MeSH), Données de séquences moléculaires (MeSH), Gènes d'ARN ribosomique (MeSH), Géographie (MeSH), Liliaceae (microbiologie), Microbiologie du sol (MeSH), Mycorhizes (classification), Mycorhizes (génétique), Mycorhizes (isolement et purification), Phylogenèse (MeSH), Polymorphisme de restriction (MeSH), Racines de plante (microbiologie), Réaction de polymérisation en chaîne (MeSH), Similitude de séquences d'acides nucléiques (MeSH).
- MESH :
- génétique : ADN fongique, ARN ribosomique 18S, Mycorhizes.
- isolement et purification : ADN fongique, Mycorhizes.
- microbiologie : Liliaceae, Racines de plante.
- Analyse de regroupements, Analyse de séquence d'ADN, Biodiversité, Canada, Clonage moléculaire, Données de séquences moléculaires, Gènes d'ARN ribosomique, Géographie, Microbiologie du sol, Phylogenèse, Polymorphisme de restriction, Réaction de polymérisation en chaîne, Similitude de séquences d'acides nucléiques.
- Wicri :
- geographic : Canada.
English descriptors
- KwdEn :
- Biodiversity (MeSH), Canada (MeSH), Cloning, Molecular (MeSH), Cluster Analysis (MeSH), DNA, Fungal (genetics), DNA, Fungal (isolation & purification), Genes, rRNA (MeSH), Geography (MeSH), Liliaceae (microbiology), Molecular Sequence Data (MeSH), Mycorrhizae (classification), Mycorrhizae (genetics), Mycorrhizae (isolation & purification), Phylogeny (MeSH), Plant Roots (microbiology), Polymerase Chain Reaction (MeSH), Polymorphism, Restriction Fragment Length (MeSH), RNA, Ribosomal, 18S (genetics), Sequence Analysis, DNA (MeSH), Sequence Homology, Nucleic Acid (MeSH), Soil Microbiology (MeSH).
- MESH :
- chemical , genetics : DNA, Fungal, RNA, Ribosomal, 18S.
- chemical , isolation & purification : DNA, Fungal.
- geographic : Canada.
- classification : Mycorrhizae.
- genetics : Mycorrhizae.
- isolation & purification : Mycorrhizae.
- microbiology : Liliaceae, Plant Roots.
- Biodiversity, Cloning, Molecular, Cluster Analysis, Genes, rRNA, Geography, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Soil Microbiology.
Abstract
Arbuscular mycorrhizal fungi (AMF) communities in Clintonia borealis roots from a boreal mixed forests in northwestern Québec were investigated. Roots were sampled from 100 m2 plots whose overstory was dominated by either trembling aspen (Populus tremuloides Michx.), white birch (Betula papyrifera Marsh.), or mixed white spruce (Picea glauca (Moench) Voss) and balsam fir (Abies balsamea (L.) Mill.). Part of the 18S ribosomal gene of the AMF was amplified and the resulting PCR products were cloned. Restriction analysis of the 576 resulting clones yielded 92 different restriction patterns which were then sequenced. Fifty-two sequences closely matched other Glomus sequences from Genbank. Phylogenetic analysis revealed 10 different AMF sequence types, most of which clustered with other uncultured AM sequences from plant roots from various field sites. Compared with other AMF communities from comparable studies, richness and diversity were higher than observed in an arable field, but lower than seen in a tropical forest and a temperate wetland. The AMF communities from Clintonia roots under the different canopy types did not differ significantly and the dominant sequence type, which clustered with AM sequences from a variety of environments and hosts at distant geographical locations, represented 66.9% of all the clones analyzed.
DOI: 10.1111/j.1574-6941.2006.00150.x
PubMed: 17064264
Affiliations:
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Forestière Interuniversitaire (GREFi), Concordia University, Montreal, QC, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Biology, Groupe de Recherche en Ecologie Forestière Interuniversitaire (GREFi), Concordia University, Montreal, QC</wicri:regionArea><wicri:noRegion>QC</wicri:noRegion></affiliation></author><author><name sortKey="Widden, Paul" sort="Widden, Paul" uniqKey="Widden P" first="Paul" last="Widden">Paul Widden</name></author></analytic><series><title level="j">FEMS microbiology ecology</title><idno type="ISSN">0168-6496</idno><imprint><date when="2006" type="published">2006</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biodiversity (MeSH)</term><term>Canada (MeSH)</term><term>Cloning, Molecular (MeSH)</term><term>Cluster Analysis (MeSH)</term><term>DNA, Fungal (genetics)</term><term>DNA, Fungal (isolation & purification)</term><term>Genes, rRNA (MeSH)</term><term>Geography (MeSH)</term><term>Liliaceae (microbiology)</term><term>Molecular Sequence Data (MeSH)</term><term>Mycorrhizae (classification)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (isolation & purification)</term><term>Phylogeny (MeSH)</term><term>Plant Roots (microbiology)</term><term>Polymerase Chain Reaction (MeSH)</term><term>Polymorphism, Restriction Fragment Length (MeSH)</term><term>RNA, Ribosomal, 18S (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Sequence Homology, Nucleic Acid (MeSH)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN fongique (génétique)</term><term>ADN fongique (isolement et purification)</term><term>ARN ribosomique 18S (génétique)</term><term>Analyse de regroupements (MeSH)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Biodiversité (MeSH)</term><term>Canada (MeSH)</term><term>Clonage moléculaire (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Gènes d'ARN ribosomique (MeSH)</term><term>Géographie (MeSH)</term><term>Liliaceae (microbiologie)</term><term>Microbiologie du sol (MeSH)</term><term>Mycorhizes (classification)</term><term>Mycorhizes (génétique)</term><term>Mycorhizes (isolement et purification)</term><term>Phylogenèse (MeSH)</term><term>Polymorphisme de restriction (MeSH)</term><term>Racines de plante (microbiologie)</term><term>Réaction de polymérisation en chaîne (MeSH)</term><term>Similitude de séquences d'acides nucléiques (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term><term>RNA, Ribosomal, 18S</term></keywords><keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>DNA, Fungal</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Canada</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN fongique</term><term>ARN ribosomique 18S</term><term>Mycorhizes</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>ADN fongique</term><term>Mycorhizes</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Liliaceae</term><term>Racines de plante</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Liliaceae</term><term>Plant Roots</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biodiversity</term><term>Cloning, Molecular</term><term>Cluster Analysis</term><term>Genes, rRNA</term><term>Geography</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Polymerase Chain Reaction</term><term>Polymorphism, Restriction Fragment Length</term><term>Sequence Analysis, DNA</term><term>Sequence Homology, Nucleic Acid</term><term>Soil Microbiology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de regroupements</term><term>Analyse de séquence d'ADN</term><term>Biodiversité</term><term>Canada</term><term>Clonage moléculaire</term><term>Données de séquences moléculaires</term><term>Gènes d'ARN ribosomique</term><term>Géographie</term><term>Microbiologie du sol</term><term>Phylogenèse</term><term>Polymorphisme de restriction</term><term>Réaction de polymérisation en chaîne</term><term>Similitude de séquences d'acides nucléiques</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Canada</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Arbuscular mycorrhizal fungi (AMF) communities in Clintonia borealis roots from a boreal mixed forests in northwestern Québec were investigated. Roots were sampled from 100 m2 plots whose overstory was dominated by either trembling aspen (Populus tremuloides Michx.), white birch (Betula papyrifera Marsh.), or mixed white spruce (Picea glauca (Moench) Voss) and balsam fir (Abies balsamea (L.) Mill.). Part of the 18S ribosomal gene of the AMF was amplified and the resulting PCR products were cloned. Restriction analysis of the 576 resulting clones yielded 92 different restriction patterns which were then sequenced. Fifty-two sequences closely matched other Glomus sequences from Genbank. Phylogenetic analysis revealed 10 different AMF sequence types, most of which clustered with other uncultured AM sequences from plant roots from various field sites. Compared with other AMF communities from comparable studies, richness and diversity were higher than observed in an arable field, but lower than seen in a tropical forest and a temperate wetland. The AMF communities from Clintonia roots under the different canopy types did not differ significantly and the dominant sequence type, which clustered with AM sequences from a variety of environments and hosts at distant geographical locations, represented 66.9% of all the clones analyzed.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17064264</PMID><DateCompleted><Year>2007</Year><Month>01</Month><Day>29</Day></DateCompleted><DateRevised><Year>2009</Year><Month>11</Month><Day>03</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0168-6496</ISSN><JournalIssue CitedMedium="Print"><Volume>58</Volume><Issue>2</Issue><PubDate><Year>2006</Year><Month>Nov</Month></PubDate></JournalIssue><Title>FEMS microbiology ecology</Title><ISOAbbreviation>FEMS Microbiol Ecol</ISOAbbreviation></Journal><ArticleTitle>Diversity of the small subunit ribosomal RNA gene of the arbuscular mycorrhizal fungi colonizing Clintonia borealis from a mixed-wood boreal forest.</ArticleTitle><Pagination><MedlinePgn>225-35</MedlinePgn></Pagination><Abstract><AbstractText>Arbuscular mycorrhizal fungi (AMF) communities in Clintonia borealis roots from a boreal mixed forests in northwestern Québec were investigated. Roots were sampled from 100 m2 plots whose overstory was dominated by either trembling aspen (Populus tremuloides Michx.), white birch (Betula papyrifera Marsh.), or mixed white spruce (Picea glauca (Moench) Voss) and balsam fir (Abies balsamea (L.) Mill.). Part of the 18S ribosomal gene of the AMF was amplified and the resulting PCR products were cloned. Restriction analysis of the 576 resulting clones yielded 92 different restriction patterns which were then sequenced. Fifty-two sequences closely matched other Glomus sequences from Genbank. Phylogenetic analysis revealed 10 different AMF sequence types, most of which clustered with other uncultured AM sequences from plant roots from various field sites. Compared with other AMF communities from comparable studies, richness and diversity were higher than observed in an arable field, but lower than seen in a tropical forest and a temperate wetland. The AMF communities from Clintonia roots under the different canopy types did not differ significantly and the dominant sequence type, which clustered with AM sequences from a variety of environments and hosts at distant geographical locations, represented 66.9% of all the clones analyzed.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>DeBellis</LastName><ForeName>Tonia</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Biology, Groupe de Recherche en Ecologie Forestière Interuniversitaire (GREFi), Concordia University, Montreal, QC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Widden</LastName><ForeName>Paul</ForeName><Initials>P</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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